Algorithms for Quantitative Pedology

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Documentation for package ‘aqp’ version 1.9.1

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A C D E F G H I L M N P R S T U misc

aqp-package Algorithms for Quantitative Pedology

-- A --

addBracket Add Depth Brackets
addDiagnosticBracket Add Depth Brackets
addVolumeFraction Symbolize Volume Fraction on a Soil Profile Collection Plot
aggregateColor Summarize Soil Colors
aggregateSoilDepth Probabalistic Estimation of Soil Depth
amarillo Amarillo Soils
aqp Algorithms for Quantitative Pedology
aqp.env Algorithms for Quantitative Pedology

-- C --

ca630 Soil Data from the Central Sierra Nevada Region of California
coordinates-method SoilProfileCollection Class
coordinates<--method SoilProfileCollection Class

-- D --

depths<- Getters, Setters, and Utility Methods for SoilProfileCollection Objects
depths<--method Getters, Setters, and Utility Methods for SoilProfileCollection Objects
depth_units Getters, Setters, and Utility Methods for SoilProfileCollection Objects
depth_units-method Getters, Setters, and Utility Methods for SoilProfileCollection Objects
depth_units<- Getters, Setters, and Utility Methods for SoilProfileCollection Objects
depth_units<--method Getters, Setters, and Utility Methods for SoilProfileCollection Objects
diagnostic_hz Getters, Setters, and Utility Methods for SoilProfileCollection Objects
diagnostic_hz-method Getters, Setters, and Utility Methods for SoilProfileCollection Objects
diagnostic_hz<- Getters, Setters, and Utility Methods for SoilProfileCollection Objects
diagnostic_hz<--method Getters, Setters, and Utility Methods for SoilProfileCollection Objects

-- E --

estimateSoilDepth Estimate Soil Depth
evalGenHZ Evaluate Generalized Horizon Labels

-- F --

f.noise Example Objective Function for Full-Pattern Matching

-- G --

generalize.hz Generalize Horizon Names
get.ml.hz Determine ML Horizon Boundaries
get.slice Slicing of SoilProfilecollection Objects
getSoilDepthClass Generate Soil Depth Class Matrix
groupedProfilePlot Grouped Soil Profile Plot
guessGenHzLevels Guess Appropriate Ordering for Generalized Horizon Labels

-- H --

horizonDepths Getters, Setters, and Utility Methods for SoilProfileCollection Objects
horizonDepths-method Getters, Setters, and Utility Methods for SoilProfileCollection Objects
horizonNames SoilProfileCollection Class
horizonNames-method SoilProfileCollection Class
horizonNames<- SoilProfileCollection Class
horizonNames<--method SoilProfileCollection Class
horizons Getters, Setters, and Utility Methods for SoilProfileCollection Objects
horizons-method Getters, Setters, and Utility Methods for SoilProfileCollection Objects
horizons<- Getters, Setters, and Utility Methods for SoilProfileCollection Objects
horizons<--method Getters, Setters, and Utility Methods for SoilProfileCollection Objects
hzDistinctnessCodeToOffset Convert Horizon Distinctness Codes

-- I --

idname Getters, Setters, and Utility Methods for SoilProfileCollection Objects
idname-method Getters, Setters, and Utility Methods for SoilProfileCollection Objects

-- L --

length-method SoilProfileCollection Class

-- M --

make.segments Lattice Panel Function for Soil Profiles
max-method SoilProfileCollection Class
metadata Getters, Setters, and Utility Methods for SoilProfileCollection Objects
metadata-method Getters, Setters, and Utility Methods for SoilProfileCollection Objects
metadata<- Getters, Setters, and Utility Methods for SoilProfileCollection Objects
metadata<--method Getters, Setters, and Utility Methods for SoilProfileCollection Objects
min-method SoilProfileCollection Class
missingDataGrid Missing Data Grid
munsell Munsell-RGB Lookup Table for Common Soil Colors
munsell2rgb Convert Munsell Notation to and from RGB color coordinates

-- N --

names SoilProfileCollection Class
names-method SoilProfileCollection Class
nrow-method SoilProfileCollection Class

-- P --

panel.depth_function Lattice Panel Function for Soil Profiles
pc Numerical Soil Profile Comparison
pc.SPC Numerical Soil Profile Comparison
plot Profile Plot
plot-method Profile Plot
plot.SoilProfileCollection Profile Plot
plotMultipleSPC Plot Multiple SoilProfileCollection Objects
plotSPC Profile Plot
plot_distance_graph Between Individual Distance Plot
prepanel.depth_function Lattice Panel Function for Soil Profiles
profileApply Apply a function to soil profiles within a SoilProfileCollection object.
profileApply-method Apply a function to soil profiles within a SoilProfileCollection object.
profileGroupLabels Soil Profile Group Labels
profile_compare Numerical Soil Profile Comparison
profile_compare-method Numerical Soil Profile Comparison
profile_id Getters, Setters, and Utility Methods for SoilProfileCollection Objects
profile_id-method Getters, Setters, and Utility Methods for SoilProfileCollection Objects
proj4string-method SoilProfileCollection Class
proj4string<--method SoilProfileCollection Class

-- R --

random_profile Random Profile
rbind.SoilProfileCollection SoilProfileCollection Class
resample.twotheta Resample an XRD Pattern
rgb2munsell Convert Munsell Notation to and from RGB color coordinates
rruff.sample Sample XRD Patterns

-- S --

show-method SoilProfileCollection Class
sim Simulate Soil Profiles
site Getters, Setters, and Utility Methods for SoilProfileCollection Objects
site-method Getters, Setters, and Utility Methods for SoilProfileCollection Objects
site<- Getters, Setters, and Utility Methods for SoilProfileCollection Objects
site<--method Getters, Setters, and Utility Methods for SoilProfileCollection Objects
siteNames SoilProfileCollection Class
siteNames-method SoilProfileCollection Class
siteNames<- SoilProfileCollection Class
siteNames<--method SoilProfileCollection Class
slab Slab-Wise Aggregation of SoilProfileCollection Objects
slab-method Slab-Wise Aggregation of SoilProfileCollection Objects
slab2 Slab-Wise Aggregation of SoilProfileCollection Objects
slice Slicing of SoilProfilecollection Objects
slice-method Slicing of SoilProfilecollection Objects
slice.fast Slicing of SoilProfilecollection Objects
SoilProfileCollection SoilProfileCollection Class
SoilProfileCollection-class SoilProfileCollection Class
sp1 Soil Profile Data Example 1
sp2 Honcut Creek Soil Profile Data
sp3 Soil Profile Data Example 3
sp4 Soil Chemical Data from Serpentinitic Soils of California
sp5 Sample Soil Database #5
subsetProfiles Subset SoilProfileCollection Objects.
subsetProfiles-method Subset SoilProfileCollection Objects.

-- T --

test_hz_logic Test Horizon Logic
texture.triangle.low.rv.high Soil Texture Low-RV-High as Defined by Quantiles

-- U --

unique Get Indices to Unique Soil Profiles Within a Collection
unique-method Get Indices to Unique Soil Profiles Within a Collection
uniqueSPC Get Indices to Unique Soil Profiles Within a Collection
unroll Unroll Genetic Horizons

-- misc --

$-method SoilProfileCollection Class
$<--method SoilProfileCollection Class
.lpp Random Profile
[-method SoilProfileCollection Class